Converting Ensembl Compara gene tree DNA alignment to corresponding amino acid alignment

Question

[marki]

Hello everyone,

I have Ensembl compara gene tree alignments (Compara.gene_trees.57.fasta.gz) in nucleotide format. According to documentation, it says that the file "contains the peptide alignment for every genetree in fasta format".

I was wondering what might be a handy tool to obtain the corresponding amino acid alignments from the file.

Thanks,
Ikram

[marki]

Here is the link from where I am downloading the data ftp://ftp.ensembl.org/pub/release-57/emf/ensembl-compara/homologies/