chipseq over various genomic locations

Question

[kanwarjag]

I am looking for a some help to broadly understand how a typical Chipseq peaks will look like over exon, genebody as well as TES. What a pattern of peaks over gene body / exon suggest.

Could some one point me to a paper/ document or figure. I googled and checked on pubmed these terms but cannot find something comprehensively.

Answer 1

[Ming Tommy Tang]

see here http://www.cgat.org/~andreas/documentation/cgat/cgat.html#cgat

Answer 2

[Ian]

There is a Nature article by ENCODE that includes a nice table summarising the distribution of different histone marks (table 2).

If you want to visualise histone mark data using ChIP-seq mapped reads I can recommend ngs-plot.

[kanwarjag]

Thanks Ian. I have used NGS plot however what I am looking for is to get explanations about plots over gene body and exons from Chipseq data.