Hello,
I'm trying to use a specific component in Anduril.
I have used just R language, now I am really lost with Anduril. It is of course a very basic question, but how can I run this components??? To me this components look like R packages, but I do know how to load or use it.
The only thing that I want is to run this component with examples files ("IN exprMatrix" and "IN cnaMatrix"). I downloaded this Xubuntu at virtual machine available in the site.
With Linux runing, terminal open... then what I do?
anduril run CN2GECollection(exprMatrix=LogMatrix,
cnaMatrix=CSV,
exprAnnotation=AnnotationTable,
//exprRefMatrix=LogMatrix,
//cnaRefMatrix=CSV,
//labels=CSV,
DRImethod="pearson",
SGRthold=0.1,
algorithm=<string>,
ediraMaxseg=50,
ediraSegment=false,
endCol="",
fdrLimit=0.1,
iClusterK=3,
iClusterOpt=false,
locusCol="",
perm=1000,
pintArm="",
pintMethod="pSimCCA",
scoreLimit=0.1,
transformType="raw",
windowSize=10)
Above is the example with default values (which of course do not work and are in a wrong syntax for sure). Thank you very much.