Question

the bam file generated by bwa mem mode don't have SM tag?

0

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10.5 years ago

naruto1nrt ▴ 50

I start to use mem mode recently,but when i found it not have SM tag in bam file. is there any parameter for this?

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ADD COMMENT • link updated 10.5 years ago by Devon Ryan 104k • written 10.5 years ago by naruto1nrt ▴ 50

score 2 · Answer 1 · 2014-05-30

2

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10.5 years ago

Devon Ryan 104k

It's the -R option, for example -R "@RG\tID:Seq01p\tSM:Seq01\tPL:ILLUMINA\tPI:330".

ADD COMMENT • link 10.5 years ago by Devon Ryan 104k