Pathway mapping software and database

Question

[Prakki Rama]

Dear Biostars,

I have four lists of fasta sequences from four different organisms. I would like to know, what are all the pathways that different organisms are involved in, and would like to compare them. I tried using KEGG-KAAS, which seems pretty simple (just requiring to upload fasta sequences), but needed to do a lot of scripting to compare how many genes involved in each pathway. Could I know, If there are resources other than KEGG, to compare my data in a simpler way.

Yours answers would help me very much. Thanks in advance for your thoughts and time.

~Prakki Rama.

[Sam]

I am not completely sure, but maybe you can try blast2go?

Answer 1

[Egon Willighagen]

PathVisio can map your data to pathways, for example, from WikiPathways, but not sure if it does the resolution of fasta sequences into identifiers. This tutorial is written for metabolomics, but it works just the same for gene identifiers and expression data.

[Prakki Rama]

Thank you. but Pathvisio seems to take only gene symbols or identifiers. It does not have the option of taking in fasta sequences.