Run tblastx against SRA files
0
0
Entering edit mode
10.6 years ago
arronar ▴ 290

Hello!

I would like to ask you if its possible to run a tblastx (Search translated nucleotide database using a translated nucleotide query) or blastx (Search protein database using a translated nucleotide query) against some SRA files locally. SRA files will be the database in this situation. I saw that NCBI supports only blastn against SRA databases.

Thank you.

sequence blast next-gen • 1.9k views
ADD COMMENT
0
Entering edit mode

I think you need to convert the .SRA files to either fastq or fasta before performing the analysis.

ADD REPLY

Login before adding your answer.

Traffic: 1595 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6