Is there an software can handle CNV analysis without control for WES data?
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10.5 years ago
naruto1nrt ▴ 50

Does control-freec can handle it?

I found it in a paper?

but when using it,i got this error:

ERROR: Currently you need to provide a control sample ('mateFile' or 'mateCopyNumberFile') when you analyze targeted sequencing data to eliminate capture bias. The GC-content bias is not the only bias in targeted sequencing.

anyone know why?

software error • 2.3k views
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10.5 years ago
poisonAlien ★ 3.2k

how about cn.mops?

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