Intuitive platform for mapping SNPs to eQTL's

Question

[Lou]

Hi,

I am looking for an up to date (hg-19) and relatively user friendly platform/R-package for determining whether psychiatric risk SNPs affect gene expression in the brain. I am pretty new to this kind of bioinformatics analyses so wondering if someone could kindly point me in the right direction.

Thanks & Best,

Tom

Answer 1

[coleman_jonathan]

Not sure if this will be exactly what you are looking for, but you could try GTex Portal, which looks at gene expression as well as eQTLs... http://www.gtexportal.org/home/searchEqtls