Meme Result To Transfac Matrix?

Question

[Hollis Wright]

Hi; I'm aware of the transfac2meme script to transform a TRANSFAC matrix to a MEME representation, but does anyone know of a script to run it backwards (basically, go from MEME output to a TRANSFAC representation)? I assume one could write a script to produce pseudosequences that would match the frequency of the MEME motif and feed that to the TRANSFAC matrix generator, but if there's an easier/already existing way to do so I'd prefer to use that, in accordance with proper Perl laziness principles. Thanks!

Hollis Wright, PhD Knight Cancer Center Oregon Health and Science University

Answer 1

[margiezilla]

Try RSAT's convert matrix tool: http://rsat.ulb.ac.be/rsat/convert-matrix.cgi

It's supposed to convert MEME matrix to TRANSFAC format