Get output for a list of Tracks & List of regions from UCSC table broswer
0
0
Entering edit mode
10.5 years ago
vlaufer ▴ 290

I want to submit a list of regions like so

chr1:128060465-129060465
chr2:56405042-57405042
chr2:124946062-125946062
chr3:18012618-19012618
chr3:28933416-29933416
chr3:87628311-88628311
chr4:6118896-7118896
chr5:52963302-53963302
chr6:74879027-75879027
chr7:20046869-21046869
chr8:37676238-38676238
chr9:92438484-93438484
chr10:47539055-48539055
chr11:89244697-90244697
chr11:98556636-99556636
chr12:98090299-99090299
chr13:47426024-48426024

Into UCSC Table Browser. No problem, I just select "defined regions" under the regions: tab at https://genome.ucsc.edu/cgi-bin/hgTables

However, suppose in the group: tab I want to select all tracks of group "Regulation". Is there a way to do this, such that I can generate one file per track without having to manually select each track?

Thank you.

Batch Multiple TableBrowser UCSC • 1.7k views
ADD COMMENT

Login before adding your answer.

Traffic: 1679 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6