Estimating effective population size (Ne) using ~1 million SNPs
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10.4 years ago
Abdel ▴ 410

Is there a tool/software package that can compute Effective Population Size (Ne) based on LD in ~200 individuals with ~1 million SNPs? I spent some time trying NeEstimator v2 (http://molecularfisherieslaboratory.com.au/neestimator-soft ), but it turned out this tool does not handle too many genetic variants very well...

Many thanks in advance!

SNP effective-population-size Ne • 3.9k views
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9.1 years ago
akang ▴ 110

Although its too late to reply but you might find your answer on How Can I Estimate Effective Population Size From Linkage Disequlibirum (R^2) Result?

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