Entering edit mode
10.4 years ago
Abdel
▴
410
Is there a tool/software package that can compute Effective Population Size (Ne) based on LD in ~200 individuals with ~1 million SNPs? I spent some time trying NeEstimator v2 (http://molecularfisherieslaboratory.com.au/neestimator-soft ), but it turned out this tool does not handle too many genetic variants very well...
Many thanks in advance!