Protein Coding Sequence

Question

[Gleb]

Hello!!

I'm very uncomfortable, but could you help me. Let's see at this link http://www.ncbi.nlm.nih.gov/protein In menu Search (bee) AND "Apis mellifera"[porgn:__txid7460]. And choose 'RefSeq ( 10618 )' right of the screen (in the Filter menu).

We have 10 618 records. Let's click one of them. In here http://www.ncbi.nlm.nih.gov/protein/NP_001011614.1 we can see amino acid code of the protein. But click CDS link.

Ok. Now we can see nucleotide code of the protein. http://www.ncbi.nlm.nih.gov/nuccore/58585171?from=135&to=638&report=gbwithparts

Please, help me. It's really? This is really nucletide code of protein? I very need it.

Sorry for bad english.

[Chris Evelo]

I don't like the "protein-dna-translation" tag since it is RNA not DNA being translated. But it is in the tag database. Should we replace all instances by just "translation" and thus effectively delete it?

[Gleb]

Please, tell me how to do this ( delete a tag ).

[Michael Schubert]

Chris: I concur, we've got the translation tag for that which is more commonly used and that should be reasonably clear.

[Chris Evelo]

In the end I only deleted it here. The other three instances actually are about (programmatic) translations between DNA and protein.

Answer 1

[Bert Overduin]

Yes, it is. What leads you to believe it's not?

[Bert Overduin]

No offense, but I strongly recommend you spend at least a few hours reading up on the basics of molecular biology.

[Michael Schubert]

However, keep in mind that this does by no means need to be the exact sequence as it occurs in the genome (splicing of introns, etc.)

[Gleb]

Grand Thank!

I have no biological education. For this reason, I'm not sure.

Could you tell me, is it true that this code always starts with a triplet 'atg' and end termination?

Another question. There are 10618 records in this site. I need all of them in one ore some files. Do you know, BioPerl or Entrez Utilities can help to get it? May be ahother programm?

I need nucleotide code for all proteins foe each organism.