Fetching Gene_Id Url After Ensembl Search
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Entering edit mode
10.8 years ago
Pappu ★ 2.1k

I am trying to fetch the urls of gene_ids after ensembl search of a gene. For example after this search:

http://bacteria.ensembl.org/Multi/Search/Results?species=all;idx=;q=ftsZ;site=ensemblunit

I would like to download all the urls like: http://bacteria.ensembl.org/salmonella_enterica_subsp_enterica_serovar_typhi_str_ct18/Gene/Summary?g=CAD01290;r=Chromosome:157097-158248;t=CAD01290

I am wondering how it can be achieved.

python • 1.6k views
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Entering edit mode
10.4 years ago
kavin.pl ▴ 70

Have a look at the biomaRt package in R.

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