sciClone error with analysis

Question

[cristinam09]

I manage to run the sciClone script with the demo data from github. I now have the following error message after I ask to writeClusterTable(sc, "results/clusters1")

Error in file(file, ifelse(append, "a", "w")) :
  cannot open the connection
In addition: Warning message:
In file(file, ifelse(append, "a", "w")) :
  cannot open file 'results/clusters1': No such file or directory

Any suggestion on where the problem may be?

Thank in advance to anyone who can help me.

[ivivek_ngs]

You have to point R the working directory where you want the results in your machine, probably you have the data in the local folder and there you have the results in one of the directory, you need to give the complete path where you want the results to be displayed.

Answer 1

[Chris Miller]

Make sure the results/ folder exists before running the script. I'll check the code in the morning and push a change if need be.