BLAST against subsets selected from within UniProt

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10.4 years ago

cdsouthan ★ 1.9k

I want to perform a BLAST seach and see the alignment results only against a small set of sequences either selected from within UniProt, or a list of IDs mapped in via the interface upload. If anyone from UniProt thinks this functionality could be added as a feature that would be great, but can anyone suggest a workround for now?

UniProt BLAST • 1.9k views

ADD COMMENT • link updated 3.0 years ago by Ram 44k • written 10.4 years ago by cdsouthan ★ 1.9k

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how about http://www.uniprot.org/blast/ or download uniprot and format your blast database ?

ADD REPLY • link 10.4 years ago by Pierre Lindenbaum 164k

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But in the former I only have a limited set of options to BLAST against, which does not include the ID list represented as the history of my interface selects. Sure, I could make local mini databases but that does not really have the flexibility I am looking for

ADD REPLY • link updated 3.0 years ago by Ram 44k • written 10.4 years ago by cdsouthan ★ 1.9k