To-date gene list of MAPK signaling pathway?

Question

[pmedi]

Hi everyone,

I'm looking for an actualized gene list of the MAPK signaling pathway (and other signaling cascades, too). I have microarray data, which I want to narrow to specific signaling cascades before I go to a gene ontology analysis. Does somebody know were can I get such a list? I tried to look at Reactome, but it is too branched in subpathways for my purposes. I also found the "GeneAssist Pathway Atlas", but I would like to have a more "independent" source. Thanks!

Answer 1

[Neilfws]

You can use the TogoWS REST service to query KEGG pathways for genes. To get genes in JSON format for the human MAPK pathway:

curl http://togows.dbcls.jp/entry/pathway/hsa04010/genes.json

[pmedi]

@Neilfws Thanks! I will try it.