How to find positions of splice sites?

Question

[Artem Kiselev]

I want to find positions of splice sites for a particular human gene. How and where can I find them? And what is the best way to find them for not-human not-model organisms?

Answer 1

[Devon Ryan]

The simplest method would be to just download that gene's annotation from biomart (obviously, these may not be complete). For a non-model organism, without doing some wet-bench experiments, you're left with looking at whatever genomic/transcriptomic information is available for it.

[Artem Kiselev]

I could not find in the biomart database splice site for the species, which I was looking for.

In result I found this article, will keep reading.