Binning Exon And Plotting Read Densities (Bed Regions) With In And Around Binned Exons

Question

[Repineme]

I want to map nucleosome (BED regions) around all hg18 exons. As you know human exons are of different sizes and they need to scaled. Is there any script/method/software that bins all exons in to same scale and calculated read densities in and outside(of certain distance) of the bins?

Answer 1

[kashiff007]

solution is here https://deeptools.readthedocs.io/en/latest/content/list_of_tools.html