How to use maximum identity > 95%, length > 200 bp as search parameters for tblastn standalone version
0
0
Entering edit mode
10.3 years ago
chevivien ▴ 90

Hello guys,

Could someone please suggest to me how to use following search parameters for tblastn search (stand alone version)

Search parameters : maximum identity > 95%, length > 200 bp and Evalue < 10e-10.(borrowed idea from http://www.biomedcentral.com/1471-2164/12/76; Digital gene expression section)

I am well conversant with blast commands such as:

tblastn -db blastdb/nippest -query mydata.fasta -evalue 10e-10 >out.nippest - outfmt 11

Following the attached paper I wish to add maximum identity >95% and length 200 bp as part of search parameters but I can't figure out how to go about. I have checked all NCBI BLAST documentations but I can't find the solution.

Thanks

tblastn • 3.0k views
ADD COMMENT
0
Entering edit mode

Seems duplicate of your own previous question

ADD REPLY
0
Entering edit mode

Yes, it is... I wrote the first question by mistake on the comment section of another question I had asked earlier on (gene duplication) by mistake and couldn't find a way to delete it....

That's why I posted it as new post. But I have figured out how to delete it.Thanks.

ADD REPLY

Login before adding your answer.

Traffic: 1905 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6