Chip-Seq GO analysis

Question

[pinky_pinkpinky]

Can anyone help me on those queries.

I used Homer for analysis of chip-seq data.

Homer generates several files related to Genome Ontology in a directory.

1. How can I map this GO information with my peak annotation file.

   It is based on gene names? or something else.

2. How can I represent graphically this GO data? Any tools for it.

Answer 1

[Ming Tommy Tang]

if you have a bed peak file, you may use GREAT.