Sequence to Protein interaction network
1
1
Entering edit mode
10.3 years ago
Ammu ▴ 50

I want to get the protein-protein interaction network from given sequences. Are there any tools for that except STRING?

protein-network • 2.5k views
ADD COMMENT
0
Entering edit mode

what species are your sequences from?

ADD REPLY
0
Entering edit mode

From human for BRCA 1 and BRCA 2 ..

ADD REPLY
4
Entering edit mode
10.3 years ago
russhh 5.7k

You should really use entrez ids or hgnc symbols instead of sequence data. There is considerable information about interaction partners for these proteins within thebiogrid and ncbi/gene if you don't want to use STRING.

ADD COMMENT
0
Entering edit mode

Thank you :)

ADD REPLY

Login before adding your answer.

Traffic: 1716 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6