Using GRCH37 with ggbio
0
1
Entering edit mode
10.2 years ago
Saad Khan ▴ 440

Hi I am trying to use ggbio with R. I am using GRCH37 assembly for my work. In ggbio there is a function called Ideogram.

I would like to use it with GRCH37. The assembly is not available in bioconductor packages usually you can use hg19 just like this.

p.ideo <- Ideogram(genome = "hg19")

I am wondering how can I make it work with GRCH37?

ggbio bioconductor r • 2.2k views
ADD COMMENT
4
Entering edit mode

Aren't hg19 and GRCH37 the same release, only that chromosomes are called slightly different? Hg19 Versus Grch37

ADD REPLY
1
Entering edit mode

Yep GRCh37 and hg19 are confusingly the same release.

ADD REPLY

Login before adding your answer.

Traffic: 2569 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6