Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using any visualization network can anyone please suggest any tool, where i can visualization in network i have gone though few paper which use cytoscape, any other suggestion also appreciated.
Thank you advance.
Thanks for suggestion. Could you please let me know whether I can feed local blast result to the network? I need to do few blast between All vs All and feed the data to network.
You would just need to have your file in aligned format, fasta or nexus. Just read it that how it works, then it would be even easier.