Question

Mapping Cdna Sequence Id To Ensembl Transcript Id

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13.3 years ago

Tariq ▴ 10

Hey guys,

I have a list of cDNA sequence ids (e.g., NM_005502.2). How can I get the corresponding Ensembl transcript id, i.e., ENSTXXXXXXXXX.

Thanks

identifiers ensembl • 3.5k views

ADD COMMENT • link updated 13.3 years ago by Sara ▴ 130 • written 13.3 years ago by Tariq ▴ 10

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Biomart is the best and available in Ensembl's main page

ADD REPLY • link updated 6.3 years ago by zx8754 12k • written 13.3 years ago by Sara ▴ 130

score 3 · Accepted Answer · 2011-08-24

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13.3 years ago

Robin Haw ▴ 170

A really cool ID mapping tool called The Synergizer from the Roth Laboratory might be helpful in this case. Alternatively, you could use BioMart to map your cDNA sequence IDs to ENSEMBL transcript IDs.

ADD COMMENT • link 13.3 years ago by Robin Haw ▴ 170

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A short video about how to use BioMart to map identifiers is here: http://youtu.be/DXPaBdPM2vs

ADD REPLY • link 13.3 years ago by Giulietta - Ensembl Helpdesk ★ 1.2k