PacBio Technology Assemblers

Question

[midox]

Hello,

I need to know the assemblers using PacBio technology like HGAP.

Do you know other friends?

Thank you for your reply

[midox]

Thank you for your reply.

Do you have a reference (article) on the Falcon?

And AHA (A Hybrid Assembler) and ALLORA (A Long Read Assembler)? do they use PacBio technology? do I have references conserant these two assemblers because I did not find it, if you have.

Thank you

Answer 1

[Picasa]

This topic is 2 years old. I am wondering if there are new softwares nowadays and any benchmark ?

Answer 2

[Biomonika (Noolean)]

For example Celera and/or Falcon. Note that by default HGAP uses Celera for assembly step.

Answer 3

[rtliu]

Large Genome Assembly with PacBio Long Reads

PacBio-only

• HGAP
• HBAR-DTK
• Falcon
• PBcR self-correction
• Celera® Assembler
• Sprai

Hybrid

• pacBioToCA
• ECTools
• Spades
• Cerulean

Gap Filling

• PBJelly 2

Scaffolding

• AHA
• PBJelly 2