Filter Sequence based on primers, target and size from fasta

Question

[raveendars]

Hello Everyone,

I want to filter sequence based on primers, target and length from large file of DNA sequences (fasta format).

How to do this?

I appreciate any help.

Thanks

Sebastin

Answer 1

[Renesh]

Try these tools;

http://www.nipgr.res.in/ngsqctoolkit.html

http://evomics.org/learning/quality-assessment-and-control-of-sequence-data/

[raveendars]

Hi Thank you for mentioning tools

But I think I need a pl or py script to extract seq based on primers and target seq

Thank you