Entering edit mode
10.2 years ago
Parham
★
1.6k
Hi,
I am practicing goseq and my organism is S. pombe. I have to provide the geneID-GOcategory relationship data to goseq. For that the manual says to use makeOrgPackageFromNCBI
function as follow:
makeOrgPackageFromNCBI(version = "0.1", author = "Some One <so@someplace.org>", maintainer = "Some One <so@someplace.org>", outputDir = ".", tax_id = "XXXX", genus = "XXXX", species = "XXXX")
But I couldn't find the appropriate parameters on NCBI. Does anybody know where to look them up?
This is where I ended up: http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=284812&lvl=3&lin=f&keep=1&srchmode=1&unlock
Thanks!
I got some help here, but with errors!