Automatic layout of SBML file in python

Question

[Fredrik]

Hi,

I have a Python script where I create an SBML model programmatically. Now I would like to do a crude automatic layout of the model. Does anyone know of a library capable of doing that? I could resolve to PyGraphviz, but I would prefer if there is something already implemented.

Kind regards,

Fredrik

Answer 1

[Moritz E. Beber]

I realize this is a super late answer but I only started watching Biostars for constraint based modeling. You could try out https://pstjohn.github.io/d3flux/ for your needs.