Trying to locate and characterise SNPs
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10.1 years ago

In this link, there is a series of manhattan plots showing the association of SNPs within a gene (in this case I'm studying TAF5 on page 3). It is evident that some SNPs within TAF5 show significance, but I cannot find their locations.... the paper is called "Biological Insights into 108 Schizophrenia-associated genetic loci" in Nature and in the supplementary information section there doesn't seem to be any document that details the position of each SNP....

Any tips?

sequencing snp • 1.7k views
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Use the most significant SNPs, plot al LD plot with this or that and you will obtain for all linked SNPs the position. For the other SNPs I see no chance to get the position if there is no information about the rs number.

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