Entering edit mode
10.1 years ago
chrisclarkson100
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160
In this link, there is a series of manhattan plots showing the association of SNPs within a gene (in this case I'm studying TAF5 on page 3). It is evident that some SNPs within TAF5 show significance, but I cannot find their locations.... the paper is called "Biological Insights into 108 Schizophrenia-associated genetic loci" in Nature and in the supplementary information section there doesn't seem to be any document that details the position of each SNP....
Any tips?
Use the most significant SNPs, plot al LD plot with this or that and you will obtain for all linked SNPs the position. For the other SNPs I see no chance to get the position if there is no information about the rs number.