Entering edit mode
10.1 years ago
Rm
8.3k
instead of
##INFO=<ID=EFF,Number=.,...
VCF I have has ....
##SnpEffVersion="3.6a (build 2014-04-24)....
##INFO=<ID=eff_ensembl_75,Number=.,
##INFO=<ID=eff_refseq,Number=.,....
##INFO=<ID=eff_knownGenes,Number=.,....
Exiting with : "no INFO[EFF] or no description "
ERROR: return status = -1
@Pierre is it possible to make GroupByGene more generalized to accommodate above
No; group by gene was designed for SnpEff /VEP
thanks, Workaround i re-annotated with standard Snpeff and reran groupbygene...