Hi!
I have a genelist (167 genes) and these genes contain motifs for 6 miRNA (some of these genes may be contain motif for than one miRNA's).
I want to construct a network representing interaction between these genes-miRNA's and between miRNA's as well.
Any suggestions?
Thank you in advance.
What are your definitions for the nodes and edges of the network?
Ideally I want to keep miRNAs as redistribution point.
Fine. But do you wish to show gene-gene interactions and if so, are those interactions physical (protein-protein) or genetic? Or are you only interested in microRNA-gene interactions?
microRNA-gene interaction network.