Question

hg19_cosmic_v54_120711.vcf for mutect analysis

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10.1 years ago

Chirag Nepal ★ 2.4k

I have been trying to download this file hg19_cosmic_v54_120711.vcf for mutect. But I have not yet found the link in Mutect page. Could someone point the link from where I could download the file.

Thanks!

mutect exome • 6.1k views

ADD COMMENT • link updated 2.8 years ago by Ram 44k • written 10.1 years ago by Chirag Nepal ★ 2.4k

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Have you read this thread in GATK? http://gatkforums.broadinstitute.org/discussion/2226/cosmic-and-dbsnp-files-for-mutect#latest

ADD REPLY • link 10.1 years ago by iraun 6.2k

Ram · Answer 1 · 2014-10-31

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10.1 years ago

arno.guille ▴ 420

This file seems outdated and not available.

I suggest you to download the latest cosmic vcf file from here and to read this thread.

ADD COMMENT • link updated 2.8 years ago by Ram 44k • written 10.1 years ago by arno.guille ▴ 420

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Thanks Guys !

In fact, when we log on to muTect page for download, these files are there.

BTW, while running muTect I get this error, do you have any idea ?

muTect analysis, error

ADD REPLY • link updated 2.8 years ago by Ram 44k • written 10.1 years ago by Chirag Nepal ★ 2.4k