where can find the dataset for the genes of fatty acid metabolism?
1
0
Entering edit mode
10.1 years ago
zhenyisong ▴ 160

I want to do gene set enrichment analysis of fatty acid metabolism. The first step is to curate the dataset on this group of genes. I checked the genes from Broad institute, they collected 42 genes from KEGG database. I also find gene set which is provided by QiaGene PCR array, which includes 84 genes. So, the problems is , which one should I use to do GSEA? Who are experts in this filed and what about their recommendations? If above information is not available, how can I (use what kind of criteria) double check and update those datasets?

gsea • 2.8k views
ADD COMMENT
1
Entering edit mode

did you mean fatty acid metabolism?

ADD REPLY
0
Entering edit mode

thanks. I changed the title.

ADD REPLY
1
Entering edit mode
10.1 years ago
Manvendra Singh ★ 2.2k

If you look into the EMBL-EBI GO term specifically fatty acid metabolsm (there are several co-occuring terms) which are cross referenced, then you get list of of genes. e,g, here.

ADD COMMENT
0
Entering edit mode

Thanks. This is the third way to retrieve the data-set on fatty acid metabolism. My worry is that, I compare those datasets from different sources, they are overlapped but not identical. I want to make sure which one is authoritative and most updated.

ADD REPLY

Login before adding your answer.

Traffic: 1900 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6