Question

Is There A Way To Convert Gs Mapper Output To Bam File?

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13.3 years ago

Gabrielw ▴ 60

I'm trying to figure out if I can convert contigs fasta format generated by GS Mapper to bam file, can someone help me?

bam conversion sequencing • 2.7k views

ADD COMMENT • link updated 12.7 years ago by lexnederbragt ★ 1.3k • written 13.3 years ago by Gabrielw ▴ 60

score 1 · Answer 1 · 2011-09-06

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13.3 years ago

lexnederbragt ★ 1.3k

Starting from newbler version 2.6, gsMapper can output BAM files (using the -bam option on the command line).

ADD COMMENT • link 13.3 years ago by lexnederbragt ★ 1.3k

score 0 · Answer 2 · 2011-09-06

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13.3 years ago

Pierre Lindenbaum 164k

Googling your question returns a link to SeqAnswers.com : http://seqanswers.com/forums/showthread.php?t=2112

ADD COMMENT • link 13.3 years ago by Pierre Lindenbaum 164k