Question

Alternative spliced genes in A. thaliana

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10.0 years ago

kandoigaurav ▴ 150

I need to retrieve a list of AS genes in thaliana, so is there any database which stores a list/details about the same? I tried searching TAIR and ARACyc, but couldn't find it there. Any suggestions for the same?

AlternateSplicing Arabidopsis ExonSkipping RNA-Seq • 1.8k views

ADD COMMENT • link updated 2.7 years ago by Ram 44k • written 10.0 years ago by kandoigaurav ▴ 150

Ram · Answer 1 · 2014-12-05

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10.0 years ago

komal.rathi ★ 4.1k

From ASIP: List and annotation of alternatively spliced genes

ADD COMMENT • link updated 2.7 years ago by Ram 44k • written 10.0 years ago by komal.rathi ★ 4.1k

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Isn't this bit old? It says, "Data Set for Wang and Brendel, PNAS 2006 (AtTAG1/RiceTAG1)". There has been tremendous increase in knowledge about AS in thaliana over the past few years.

ADD REPLY • link updated 2.7 years ago by Ram 44k • written 10.0 years ago by kandoigaurav ▴ 150

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You should provide this information in your question to get more specific answers. As it currently reads, it sounds like you are just asking if there is a database for AS in A. thaliana. Of course, a quick web search reveals quite a few databases, so it's not clear what you are looking for (or if you've searched the web/literature).

ADD REPLY • link updated 2.7 years ago by Ram 44k • written 10.0 years ago by SES 8.6k