Using SNPSVM for variant calling
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10.0 years ago
bigbang ▴ 20

Anyone could explain me how to identify SNPs using Support vector machine? I have installed SNPSVM and Libsvm. Now I just wanted to use it for a simple example like Lambda phage and need some help of generating trained models (creating true and false sites of .vcf files), how to use them in the next steps etc. I have read some papers and webpages about snpsvm but still don't really get how to execute this method exactly, because I am very new in this field and need some easy-understandable explanation. Sorry of my poor knowledge and obvious questions. Thank you.

SNP next-gen • 1.4k views
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