BamUtil for Base Qual Recalibration

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10.0 years ago

Danielk ▴ 640

Hi all,

Does anyone have experience with or has benchmarked BamUtil for Base Quality Score Recalibration of NGS data? Looks like an interesting alternative to GATK.

Wiki: http://genome.sph.umich.edu/wiki/BamUtil:_recab

cheers

recalibration recal bqsr basequal gatk • 2.4k views

ADD COMMENT • link updated 2.7 years ago by Ram 44k • written 10.0 years ago by Danielk ▴ 640

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Entering edit mode

This question is now 2.5 years old... With some hope : has anyone some information on performances of bamUtil compared to BQSR (not time performances but benchmarking or such) ? I would greatly appreciate any pointers!

ADD REPLY • link 7.5 years ago by Leonor Palmeira 3.9k

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