Question

Any tools to predict non-coding driver mutations

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9.9 years ago

Ming Tommy Tang ★ 4.5k

Hi,

I am looking for a tool to predict functional mutations in non-coding region to drive cancer progression.

Do you know any tools/software? Most tools I see are for protein-coding regions.

Thank you.

WGS • 2.5k views

ADD COMMENT • link updated 2.7 years ago by Ram 44k • written 9.9 years ago by Ming Tommy Tang ★ 4.5k

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ADD REPLY • link updated 2.7 years ago by Ram 44k • written 9.9 years ago by Christian ★ 3.1k

Ram · Answer 1 · 2014-12-09

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9.9 years ago

Charles Warden 8.3k

I've used FunSeq. I'm not sure it if really the best, but I think it gave non-random enrichment. Also, there is a FunSeq2, which I haven't tried.

ADD COMMENT • link updated 2.7 years ago by Ram 44k • written 9.9 years ago by Charles Warden 8.3k

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I have heard about it, will try it out! Thanks

ADD REPLY • link updated 2.7 years ago by Ram 44k • written 9.9 years ago by Ming Tommy Tang ★ 4.5k