Tool Generates CDS sequence

Question

[evo_genomics]

Can any one suggest me the name of tool that generates CDS sequence from Genomic File (I am working on more than 100 Genomic Files).

Answer 1

[iraun]

If you have the transcript sequences of your genomic files, you can use TransDecoder: http://transdecoder.sourceforge.net/.

TransDecoder can identify CDS introducing as input a transcript fasta file. First identifies a minimum length open reading frames (ORF) within transcript sequences, and then it perform some kind of scoring in order to choose the most relevant CDS.