Question

Does Pindel generate genotypes?

1

Entering edit mode

10.0 years ago

Tommy Carstensen ▴ 210

Does Pindel generate genotypes or does it only report on sites? Adding extra characters to get to 80.

pindel genotype vcf • 1.9k views

ADD COMMENT • link updated 2.8 years ago by Ram 44k • written 10.0 years ago by Tommy Carstensen ▴ 210

Ram · Accepted Answer · 2014-12-18

4

Entering edit mode

10.0 years ago

liangkaiye ▴ 250

There is a pindel2vcf binary inside Pindel package to convert Pindel calls to genotyped vcf.

ADD COMMENT • link updated 2.8 years ago by Ram 44k • written 10.0 years ago by liangkaiye ▴ 250