SMART libraries for InterProScan

Question

[Alex]

I'm trying to install interproscan-5.8-49.0 and I don't know where I can find SMART overlapping and threshold libraries for:

# Note: Smart overlapping and threshold files not distributed with InterProScan 5, please install separately e.g. in data/smart/6.2

smart.hmm.path.6.2=data/smart/6.2/smart.HMMs
smart.hmm.bin.path.6.2=data/smart/6.2/smart.HMMs.bin
smart.overlapping.path.6.2=
smart.threshold.path.6.2=

I downloaded SMART from http://www.embl-em.de/ but can't find overlapping and threshold libraries inside. Any hints?

Answer 1

[ganga.jeena]

Hi,

Could you find an alternative. I cannot find SMART 6.2 on EMBL anymore, the new version has the threshold and hmm, but not sure if that runs with interproscan. If you have smart6.2, could you provide me the link to download?

thanks in advance

Ganga Jeena