Question

Fasta sequence of nucleotide sequences

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10.1 years ago

ks26atul • 0

I have fasta format nucleotides sequences. I want to filter less than 200 fasta sequence from file.Please tell me any software or tool?

sequence • 2.2k views

ADD COMMENT • link updated 18 months ago by Ram 44k • written 10.1 years ago by ks26atul • 0

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Thanks dear

ADD REPLY • link 10.1 years ago by ks26atul • 0

Ram · Accepted Answer · 2014-12-19

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10.1 years ago

Brian Bushnell 20k

reformat.sh in=reads.fasta out=filtered.fasta minlength=200

ADD COMMENT • link updated 5.2 years ago by Ram 44k • written 10.1 years ago by Brian Bushnell 20k

score 0 · Accepted Answer · 2014-12-19

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10.1 years ago

Pierre Lindenbaum 164k

awk '/^>/ {N++;if(N>200) exit 0;} {print;}' in.fa

ADD COMMENT • link 10.1 years ago by Pierre Lindenbaum 164k