how to convert the UCSC alignment chain file to read-able sequence file
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9.9 years ago
Pei ▴ 220

Hi All:

I am looking for pairwise genomic alignment for human and mouse. I was guided to UCSC http://hgdownload.cse.ucsc.edu/goldenPath/hg19/vsMm9/ but the chain file I found did not provide sequence-alignment directly. Do I need to construct the sequence-level alignment from these chain file by other ways?

Thanks in advance!

Best

pairwise-genomic-alignment • 2.7k views
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