Question

Variant filtering parameters

0

Entering edit mode

9.9 years ago

897598644 ▴ 100

Excuse me:

After calling variants, there were some variants with high coverage but VQSRTrancheSNP99.00 to 99.90. Should these variants be accepted?

Any thing that would help me understand the issue would be much appreciated!

alignment next-gen-sequencing sequence • 1.5k views

ADD COMMENT • link updated 2.7 years ago by Ram 44k • written 9.9 years ago by 897598644 ▴ 100

Ram · Answer 1 · 2018-12-10

0

Entering edit mode

6.0 years ago

Kevin Blighe 88k

Take a look here.

Kevin

ADD COMMENT • link updated 2.7 years ago by Ram 44k • written 6.0 years ago by Kevin Blighe 88k