Question

fungal genome annotation

2

Entering edit mode

9.8 years ago

sharma_tina189059 ▴ 50

Can anyone tell me about fungal genome annotation. I want to find out genes from contigs. What would be the best protocol and which software are used for eukaryotic genome annotation on Windows platform. How augustus is used for this purpose, I have data in contigs form. Please provide the tutorial for this genome analysis.

genome • 2.6k views

ADD COMMENT • link updated 2.7 years ago by Ram 44k • written 9.8 years ago by sharma_tina189059 ▴ 50

0

Entering edit mode

You, normally, should find all information needed here which is just the augustus manual.

ADD REPLY • link updated 2.7 years ago by Ram 44k • written 9.8 years ago by Phil S. ▴ 700

Ram · Answer 1 · 2015-02-26

1

Entering edit mode

9.7 years ago

dago ★ 2.8k

Try Maker

ADD COMMENT • link updated 2.7 years ago by Ram 44k • written 9.7 years ago by dago ★ 2.8k

0

Entering edit mode

funannotate is also an option

ADD REPLY • link updated 2.7 years ago by Ram 44k • written 6.8 years ago by BalderNGS • 0