Entering edit mode
9.9 years ago
jolespin
▴
150
I just installed vcftools and I'm trying to find a way to use it to tell me the # of mappable positions and # of segregating bi-allelic polymorphism sites. Does anybody know how to do this?
The vcf file I'm using is from the 1000 genomes project: ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/release/20110521/ALL.chr21.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz
