Correlate gene expression data with mutations TCGA

Question

[nikkitta.sa]

Hello,

I would like to correlate gene expression with mutations in breast invasive carcinoma.

I downloaded level 3 gene expression data from TCGA.

Now, to take it one step further, what kind of data can I work with for drawing a correlation between up- or down- regulation of my gene of interest with the number of mutations observed in tumor samples?

Answer 1

[EagleEye]

This might be useful for you: http://www.ncbi.nlm.nih.gov/pubmed/25383969

[nikkitta.sa]

Thanks, I'll look into it.