Whole genome comparison

Question

[nepgorkhey]

During comparative genome analysis, how will it be possible to extract similar genes and their sequences from two whole genomes? Suppose, when working with two bacteria genomes we found they have 3500 genes in common. Now I want to take the sequences of those 3500 genes from both the genomes.

Answer 1

[dago]

I think that orthoOMLC and get_homologoues can help you with that. at hte end you should have sorted out the common genes are unique files.

Answer 2

[nepgorkhey]

Seems like get_homologues is going to help me...Thanks a lot :)