PAML method for estimation of dN/dS

Question

[evo_genomics]

I am estimating synonymous/non synonymous substitution rate (dN/dS) of gene in primate lineage. Which method of PAML is most appropriate for estimation of dN/dS ratio along each branch of primate lineage.

Answer 1

[Brice Sarver]

codeml branch or branch-site models.

[evo_genomics]

Thank you