Question

Protein-Domain Database.

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13.2 years ago

Ivr • 0

I'm looking for a huge input set for my algorithm, that contains info about proteins and corresponded domains (something like Pfam but bigger). If you aware of such a database, please drop me a line.

protein • 3.1k views

ADD COMMENT • link updated 13.2 years ago by Chris ▴ 190 • written 13.2 years ago by Ivr • 0

score 4 · Answer 1 · 2011-10-08

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13.2 years ago

Khader Shameer 18k

Have you tried InterPro or NCBI-CDD ?

ADD COMMENT • link 13.2 years ago by Khader Shameer 18k

score 0 · Answer 2 · 2011-10-08

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13.2 years ago

Chris ▴ 190

SCOP? CATH?

ADD COMMENT • link 13.2 years ago by Chris ▴ 190

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AFAIK, protein domains in structural domain databases (SCOP or CATH) have less coverage than sequence domain database (Pfam).

ADD REPLY • link 13.2 years ago by Khader Shameer 18k